Package: ravepipeline 0.0.1

Zhengjia Wang

ravepipeline: Pipeline Infrastructure for Reproducible Analysis and Visualization of Intracranial Electroencephalography ('RAVE')

Defines the underlying file structure for a 'RAVE' pipeline; provides high-level class definition to build, compile, set, execute, and share analysis pipelines. Both R and 'Python' are supported, with 'Markdown' and 'shiny' dashboard templates for extending and building customized pipelines. See the full documentations at <https://rave.wiki>; to cite us, check out our paper by Magnotti, Wang, and Beauchamp (2020, <doi:10.1016/j.neuroimage.2020.117341>), or run 'citation("ravepipeline")' for details.

Authors:Zhengjia Wang [aut, cre, cph], John Magnotti [ctb, res], Xiang Zhang [ctb, res], Michael Beauchamp [ctb, res], Trustees of University of Pennsylvania [cph]

ravepipeline_0.0.1.tar.gz
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ravepipeline_0.0.1.tar.gz(r-4.5-noble)ravepipeline_0.0.1.tar.gz(r-4.4-noble)
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ravepipeline.pdf |ravepipeline.html✨
ravepipeline/json (API)
NEWS

# Install 'ravepipeline' in R:
install.packages('ravepipeline', repos = c('https://rave-ieeg.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/dipterix/ravepipeline/issues

Pkgdown site:https://dipterix.org

On CRAN:

Conda:

1.70 score 59 exports 45 dependencies

Last updated 2 days agofrom:9699382173. Checks:9 OK. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKMar 07 2025
R-4.5-winOKMar 07 2025
R-4.5-macOKMar 07 2025
R-4.5-linuxOKMar 07 2025
R-4.4-winOKMar 07 2025
R-4.4-macOKMar 07 2025
R-4.4-linuxOKMar 07 2025
R-4.3-winOKMar 07 2025
R-4.3-macOKMar 07 2025

Exports:%...!%%...>%%...T!%%...T>%add_module_registryconfigure_knitrget_module_descriptionget_modules_registriesglueinstall_modulesinstall_snippetlist_snippetsload_snippetload_targetsmodule_addmodule_registrymodule_registry2pipelinepipeline_attachpipeline_buildpipeline_cleanpipeline_create_subject_pipelinepipeline_create_templatepipeline_debugpipeline_dep_targetspipeline_descriptionpipeline_evalpipeline_findpipeline_forkPIPELINE_FORK_PATTERNpipeline_from_pathpipeline_get_preferencespipeline_has_preferencespipeline_hasnamepipeline_install_githubpipeline_install_localpipeline_listpipeline_load_extdatapipeline_progresspipeline_readpipeline_rootpipeline_runpipeline_run_barepipeline_save_extdatapipeline_set_preferencespipeline_settings_getpipeline_settings_setpipeline_setup_rmdpipeline_sharedpipeline_target_namespipeline_vartablepipeline_visualizepipeline_watchraveio_confpathraveio_getoptraveio_resetoptraveio_setoptravepipeline_finalize_installationupdate_local_snippet

Dependencies:backportsbase64urlcallrclicodetoolscpp11data.tabledigestevaluatefansifastmapfstfstcorefutureglobalsgluehighrigraphjsonliteknitrlaterlatticelifecyclelistenvmagrittrMatrixparallellypillarpkgconfigprocessxpromisespsR6Rcppremotesrlangsecretbasetargetstibbletidyselectutf8vctrswithrxfunyaml

Readme and manuals

Help Manual

Help pageTopics
Install 'RAVE' modulesinstall_modules
Add new 'RAVE' (2.0) module to current projectmodule_add
'RAVE' module registryadd_module_registry get_modules_registries get_module_description module_registry module_registry2
Creates 'RAVE' pipeline instancepipeline pipeline_from_path
Install 'RAVE' pipelinespipeline_install pipeline_install_github pipeline_install_local
Get or change pipeline input parameter settingspipeline_settings_get pipeline_settings_get_set pipeline_settings_set
Configure ''rmarkdown'' files to build 'RAVE' pipelinesconfigure_knitr pipeline-knitr-markdown pipeline_setup_rmd
Pipeline result objectPipelineResult
Class definition for pipeline toolsPipelineTools
Low-level 'RAVE' pipeline functionsload_targets pipeline_attach pipeline_build pipeline_clean pipeline_create_subject_pipeline pipeline_create_template pipeline_debug pipeline_dep_targets pipeline_description pipeline_eval pipeline_find pipeline_fork pipeline_get_preferences pipeline_hasname pipeline_has_preferences pipeline_list pipeline_load_extdata pipeline_progress pipeline_read pipeline_root pipeline_run pipeline_run_bare pipeline_save_extdata pipeline_set_preferences pipeline_shared pipeline_target_names pipeline_vartable pipeline_visualize pipeline_watch rave-pipeline
'RAVE' code snippetsinstall_snippet list_snippets load_snippet rave-snippet update_local_snippet
Set/Get 'RAVE' optionraveio-option raveio_confpath raveio_getopt raveio_resetopt raveio_setopt
Download 'RAVE' built-in pipelines and code snippetsravepipeline_finalize_installation
Constant variables used in 'RAVE' pipelinePIPELINE_FORK_PATTERN ravepipeline-constants