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Package: raveclusters 0.1.0.9000

Xiang Zhang

raveclusters: Group-level Clustering on 'RAVE' Electrode Signals

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Authors:Xiang Zhang [cre, aut], Zhengjia Wang [aut]

raveclusters_0.1.0.9000.tar.gz
raveclusters_0.1.0.9000.zip(r-4.5)raveclusters_0.1.0.9000.zip(r-4.4)raveclusters_0.1.0.9000.zip(r-4.3)
raveclusters_0.1.0.9000.tgz(r-4.4-any)raveclusters_0.1.0.9000.tgz(r-4.3-any)
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raveclusters_0.1.0.9000.tgz(r-4.4-emscripten)raveclusters_0.1.0.9000.tgz(r-4.3-emscripten)
raveclusters.pdf |raveclusters.html✨
raveclusters/json (API)

# Install 'raveclusters' in R:

install.packages('raveclusters', repos = c('https://rave-ieeg.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/z94007/raveclusters/issues

On CRAN:

2.70 score 24 exports 235 dependencies

Last updated 2 years agofrom:7ada483bab (on rave2.0-pipeline). Checks:OK: 1 WARNING: 6. Indexed: no.

Target	Result	Date
Doc / Vignettes	OK	Nov 24 2024
R-4.5-win	WARNING	Nov 24 2024
R-4.5-linux	WARNING	Nov 24 2024
R-4.4-win	WARNING	Nov 24 2024
R-4.4-mac	WARNING	Nov 24 2024
R-4.3-win	WARNING	Nov 24 2024
R-4.3-mac	WARNING	Nov 24 2024

Exports:best_criterion best_nclusters build_roi_levels calculate_distance cluster_dendrogram cluster_index cluster_index_methods cluster_mds_plot cluster_membership cluster_mse cluster_on_brain cluster_tree cluster_visualization convert_cluster_table dev_raveclusters find_source import_configurations RAVE_ROI_KEY ravecluster ravecluster_default_opts ravecluster_target_names scan_power_explorer_exports shiny_cex.main table_apply_roi

Dependencies:abind ape askpass backports base64enc base64url BH bit bit64 bitops boot brew brio broom bslib cachem callr car carData checkmate cli clipr cluster clusterCrit codetools colorspace commonmark corrplot cowplot cpp11 crayon credentials crosstalk curl data.table dendextend Deriv desc devtools diffobj digest dipsaus doBy downlit downloader dplyr DT dtw edfReader ellipse ellipsis emmeans estimability evaluate factoextra FactoMineR fansi farver fastmap fftwtools filearray flashClust fontawesome formatR Formula freesurferformats fs fst fstcore future future.apply generics gert ggplot2 ggpubr ggrepel ggsci ggsignif gh gifti gitcreds globals glue gridExtra gsignal gtable hdf5r here highr htmltools htmlwidgets httpuv httr httr2 igraph ini IRdisplay IRkernel isoband jquerylib jsonlite knitr labeling later lattice lazyeval leaps lifecycle listenv lme4 logger magrittr MASS Matrix MatrixModels memoise mgcv microbenchmark mime miniUI minqa modelr multcompView multitaper munsell mvtnorm nlme nloptr nnet numDeriv openssl oro.nifti parallelly pbdZMQ pbkrtest pillar pkgbuild pkgconfig pkgdown pkgfilecache pkgload plyr png polynom pracma praise prettyunits processx profvis progressr promises proxy ps purrr quantreg R.matlab R.methodsS3 R.oo R.utils R6 ragg rappdirs rave ravedash raveio ravetools rcmdcheck RColorBrewer Rcpp RcppEigen RcppTOML remotes repr reshape2 reticulate rlang rmarkdown RNifti RNiftyReg roxygen2 rprojroot rpymat rstatix rstudioapi Rtsne rutabaga rversions sass scales scatterplot3d secretbase servr sessioninfo shidashi shiny shinydashboard shinyFiles shinyjs shinyvalidate shinyWidgets signal sourcetools SparseM startup stringi stringr survival sys systemfonts targets testthat textshaping threeBrain tibble tidyr tidyselect tinytex urlchecker usethis utf8 uuid vctrs viridis viridisLite visNetwork waldo waveslim whisker withr xfun xml2 xopen xtable yaml zip

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Rendered fromA_Quick_Start.Rmdusingknitr::rmarkdownon Nov 24 2024.

Last update: 2019-11-08
Started: 2019-11-08

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Calculate cluster centroid and mean standard error	cluster_mse
Calculate clustering index	best_criterion best_nclusters cluster-index cluster_index cluster_index_methods
Convert 'RAVE' cluster results into a readable table	convert_cluster_table
Function to load all dev funtions and wrap them within an environment	dev_raveclusters
Data import functions used to locate data exported by power explorer module.	find_source import_configurations rave-cluster-data-import scan_power_explorer_exports
Global variables used by 'RAVE' clustering module	raveclusters-globals RAVE_ROI_KEY shiny_cex.main