{
  "_id": "6adb66d158000136b5c828d1",
  "Package": "threeBrain",
  "Type": "Package",
  "Title": "Your Advanced 3D Brain Visualization",
  "Version": "1.3.0.77",
  "Authors@R": "c(\nperson(\"Zhengjia\", \"Wang\", email = \"dipterix.wang@gmail.com\", role = c(\"aut\", \"cre\", \"cph\")),\nperson(\"Xiang\", \"Zhang\", email = \"xiang.zhang@pennmedicine.upenn.edu\", role = c(\"ctb\", \"res\")),\nperson(\"Brian\", \"Metzger\", email = \"bmetzge1@swarthmore.edu\", role = c(\"res\")),\nperson(\"Elizabeth\", \"Nesbitt\", email = \"Elizabeth.Nesbitt@bcm.edu\", role = c(\"res\")),\nperson(\"Meng\", \"Li\", email = \"meng@rice.edu\", role = c(\"ths\")),\nperson(\"John\", \"Magnotti\", email = \"John.Magnotti@Pennmedicine.upenn.edu\", role = c(\"ctb\", \"res\")),\nperson(\"Michael\", \"Beauchamp\", email = \"Michael.Beauchamp@Pennmedicine.upenn.edu\", role = c(\"ths\", \"ctb\", \"dtc\"))\n)",
  "Description": "A fast, interactive cross-platform, and easy to share\n'WebGL'-based 3D brain viewer that visualizes 'FreeSurfer'\nand/or 'AFNI/SUMA' surfaces. The viewer widget can be either\nstandalone or embedded into 'R-shiny' applications. The\nstandalone version only require a web browser with 'WebGL2'\nsupport (for example, 'Chrome', 'Firefox', 'Safari'), and can\nbe inserted into any websites. The 'R-shiny' support allows the\n3D viewer to be dynamically generated from reactive user\ninputs. Please check the publication by Wang, Magnotti, Zhang,\nand Beauchamp (2023, <doi:10.1523/ENEURO.0328-23.2023>) for\nelectrode localization. This viewer has been fully adopted by\n'RAVE' <https://rave.wiki>, an interactive toolbox to analyze\n'iEEG' data by Magnotti, Wang, and Beauchamp (2020,\n<doi:10.1016/j.neuroimage.2020.117341>). Please check\ncitation(\"threeBrain\") for details.",
  "License": "MPL-2.0",
  "Encoding": "UTF-8",
  "Language": "en-US",
  "URL": "https://dipterix.org/threeBrain/,\nhttps://github.com/dipterix/threeBrain",
  "BugReports": "https://github.com/dipterix/threeBrain/issues",
  "VignetteBuilder": "knitr",
  "Config/roxygen2/version": "8.1.0",
  "Config/pak/sysreqs": "cmake make libicu-dev libpng-dev libuv1-dev\nlibxml2-dev libssl-dev zlib1g-dev",
  "Repository": "https://rave-ieeg.r-universe.dev",
  "Date/Publication": "2026-10-23 04:09:55 UTC",
  "RemoteUrl": "https://github.com/dipterix/threeBrain",
  "RemoteRef": "HEAD",
  "RemoteSha": "15249ad055da8975259fe86d8351e8219c8b2707",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-23 13:43:12 UTC",
    "User": "root"
  },
  "Author": "Zhengjia Wang [aut, cre, cph],\nXiang Zhang [ctb, res],\nBrian Metzger [res],\nElizabeth Nesbitt [res],\nMeng Li [ths],\nJohn Magnotti [ctb, res],\nMichael Beauchamp [ths, ctb, dtc]",
  "Maintainer": "Zhengjia Wang <dipterix.wang@gmail.com>",
  "_user": "rave-ieeg",
  "_type": "src",
  "_file": "threeBrain_1.3.0.77.tar.gz",
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  "_sha256": "26b1981f79dba3893cc0d6dc4f56dcaca26b9c53119f54f59b615da1aa75e92e",
  "_expires": "2027-01-31T13:53:18.000Z",
  "_created": "2026-10-23T13:43:12.000Z",
  "_published": "2026-10-23T13:53:20.789Z",
  "_upstream": "https://github.com/dipterix/threeBrain",
  "_status": "success",
  "_maintainer": {
    "name": "Zhengjia Wang",
    "email": "dipterix.wang@gmail.com",
    "login": "dipterix",
    "description": "Know the known to know the unknown",
    "uuid": 8163576
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  "_tags": [],
  "_topics": [
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    "ecog",
    "electroencephalography",
    "ieeg",
    "localization",
    "mri-brain",
    "neuroimaging",
    "template-brains"
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    "name": "RAVE-iEEG",
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    "description": "Reproducible Analysis & Visualization of iEEG"
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  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
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    "extra/readme.md",
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  "_realowner": "dipterix",
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      "date": "2019-06-28"
    },
    {
      "version": "0.1.3",
      "date": "2019-09-10"
    },
    {
      "version": "0.1.4",
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    {
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    {
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    },
    {
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  "_exports": [
    "AbstractGeom",
    "add_nifti",
    "add_streamline",
    "add_voxel_cube",
    "available_templates",
    "BlankGeom",
    "brain_proxy",
    "brain_setup",
    "calculate_rotation",
    "check_freesurfer_path",
    "conform_volume",
    "create_colormap",
    "create_group",
    "create_voxel_cube",
    "cross_prod",
    "DataCubeGeom",
    "DataCubeGeom2",
    "default_template_directory",
    "download_N27",
    "download_template_subject",
    "FreeGeom",
    "freeserfer_colormap",
    "freesurfer_lut",
    "generate_cortical_parcellation",
    "generate_smooth_envelope",
    "generate_subcortical_surface",
    "geom_freemesh",
    "geom_sphere",
    "GeomGroup",
    "get_ijk2ras",
    "import_from_freesurfer",
    "import_fs",
    "import_suma",
    "LineSegmentsGeom",
    "list_electrode_prototypes",
    "load_colormap",
    "load_prototype",
    "localization_module",
    "merge_brain",
    "new_electrode_prototype",
    "plot_slices",
    "read_colormap",
    "read_fs_asc",
    "read_fs_m3z",
    "read_gii2",
    "read_mgz",
    "read_volume",
    "read.fs.annot",
    "read.fs.curv",
    "read.fs.label",
    "read.fs.mgh",
    "read.fs.morph",
    "read.fs.surface",
    "read.fs.transform",
    "read.fs.volume",
    "read.fs.weight",
    "read.nifti1.data",
    "read.nifti1.header",
    "read.nifti2.data",
    "read.nifti2.header",
    "renderBrain",
    "save_brain",
    "save_colormap",
    "seeg_prototype",
    "set_default_template",
    "SphereGeom",
    "SpriteGeom",
    "StreamlineGeom",
    "TextDecorGeom",
    "threeBrain",
    "threebrain_finalize_installation",
    "threejs_brain",
    "threejsBrainOutput",
    "TubeGeom",
    "video_content",
    "viewer_hub_list",
    "viewer_hub_path",
    "viewer_hub_start",
    "viewer_hub_stop",
    "ViewerProxy",
    "volume_to_surf",
    "write.fs.surface",
    "write.nifti1",
    "write.nifti2"
  ],
  "_help": [
    {
      "page": "AbstractGeom",
      "title": "R6 Class - Abstract Class of Geometries",
      "topics": [
        "AbstractGeom"
      ]
    },
    {
      "page": "add_streamline",
      "title": "Add a streamline (fiber tract) bundle to a brain object",
      "topics": [
        "add_streamline"
      ]
    },
    {
      "page": "BlankGeom",
      "title": "A geometry that renders nothing",
      "topics": [
        "BlankGeom"
      ]
    },
    {
      "page": "brain_proxy",
      "title": "Shiny Proxy for Viewer",
      "topics": [
        "brain_proxy"
      ]
    },
    {
      "page": "brain_setup",
      "title": "Setup Package, Install Environment",
      "topics": [
        "brain_setup"
      ]
    },
    {
      "page": "calculate_rotation",
      "title": "Calculate rotation matrix from non-zero vectors",
      "topics": [
        "calculate_rotation"
      ]
    },
    {
      "page": "check_freesurfer_path",
      "title": "Function to check whether `FreeSurfer` folder has everything we need",
      "topics": [
        "check_freesurfer_path"
      ]
    },
    {
      "page": "conform_volume",
      "title": "Conform imaging data in ''FreeSurfer'' way",
      "topics": [
        "conform_volume"
      ]
    },
    {
      "page": "create_group",
      "title": "Create a geometry group containing multiple geometries",
      "topics": [
        "create_group"
      ]
    },
    {
      "page": "cross_prod",
      "title": "Calculate cross-product of two vectors in '3D'",
      "topics": [
        "cross_prod"
      ]
    },
    {
      "page": "DataCubeGeom",
      "title": "R6 Class - Generate Data Cube Geometry",
      "topics": [
        "DataCubeGeom"
      ]
    },
    {
      "page": "DataCubeGeom2",
      "title": "R6 Class - Generate Data Cube Geometry via 3D Volume Texture",
      "topics": [
        "DataCubeGeom2"
      ]
    },
    {
      "page": "default_template_directory",
      "title": "Default Directory to Store Template Brain",
      "topics": [
        "default_template_directory"
      ]
    },
    {
      "page": "FreeGeom",
      "title": "R6 Class - Generate Geometry from Vertices and Face Indices",
      "topics": [
        "FreeGeom"
      ]
    },
    {
      "page": "freesurfer_lut",
      "title": "Query the 'FreeSurfer' labels",
      "topics": [
        "freesurfer_lut"
      ]
    },
    {
      "page": "generate_cortical_parcellation",
      "title": "Generate cortical annotations from template using surface mapping",
      "topics": [
        "generate_cortical_parcellation"
      ]
    },
    {
      "page": "generate_smooth_envelope",
      "title": "Generate smooth envelope around surface",
      "topics": [
        "generate_smooth_envelope"
      ]
    },
    {
      "page": "generate_subcortical_surface",
      "title": "Approximate 'sub-cortical' surfaces from 'parcellation'",
      "topics": [
        "generate_subcortical_surface"
      ]
    },
    {
      "page": "geom_freemesh",
      "title": "Creates any mesh geometry given vertices and face indices",
      "topics": [
        "geom_freemesh"
      ]
    },
    {
      "page": "geom_sphere",
      "title": "Create sphere geometry",
      "topics": [
        "geom_sphere"
      ]
    },
    {
      "page": "GeomGroup",
      "title": "R6 Class - Generate Group of Geometries",
      "topics": [
        "GeomGroup"
      ]
    },
    {
      "page": "get_digest_header",
      "title": "Function to read digest header",
      "topics": [
        "get_digest_header"
      ]
    },
    {
      "page": "get_ijk2ras",
      "title": "Get 'voxel' to world matrix",
      "topics": [
        "get_ijk2ras"
      ]
    },
    {
      "page": "import_from_freesurfer",
      "title": "Import from `FreeSurfer` and create `JSON` cache for 3D viewer",
      "topics": [
        "import_from_freesurfer"
      ]
    },
    {
      "page": "import-fs-suma",
      "title": "Import 'FreeSurfer' or 'SUMA' files into the viewer structure",
      "topics": [
        "import-fs-suma",
        "import_fs",
        "import_suma"
      ]
    },
    {
      "page": "LineSegmentsGeom",
      "title": "R6 Class - Generate Line Segments",
      "topics": [
        "LineSegmentsGeom"
      ]
    },
    {
      "page": "list_electrode_prototypes",
      "title": "List or load all electrode prototypes",
      "topics": [
        "list_electrode_prototypes",
        "load_prototype"
      ]
    },
    {
      "page": "localization_module",
      "title": "Launch a 'shiny' application to localize electrodes",
      "topics": [
        "localization_module"
      ]
    },
    {
      "page": "merge_brain",
      "title": "Create Multi-subject Template",
      "topics": [
        "merge_brain"
      ]
    },
    {
      "page": "new_electrode_prototype",
      "title": "Create or load new electrode prototype from existing configurations",
      "topics": [
        "new_electrode_prototype"
      ]
    },
    {
      "page": "plot_slices",
      "title": "Plot slices of volume",
      "topics": [
        "plot_slices"
      ]
    },
    {
      "page": "read_fs_asc",
      "title": "Read `FreeSurfer` ascii file",
      "topics": [
        "read_fs_asc"
      ]
    },
    {
      "page": "read_fs_labels",
      "title": "Read FreeSurfer Annotations",
      "topics": [
        "read_fs_labels"
      ]
    },
    {
      "page": "read_fs_m3z",
      "title": "Read `FreeSurfer` m3z file",
      "topics": [
        "read_fs_m3z"
      ]
    },
    {
      "page": "read_fs_mgh_mgz",
      "title": "Read `FreeSurfer` `mgz/mgh` file",
      "topics": [
        "read_fs_mgh_mgz"
      ]
    },
    {
      "page": "read_gii2",
      "title": "Function to load surface data from `Gifti` files",
      "topics": [
        "read_gii2"
      ]
    },
    {
      "page": "read_mgz",
      "title": "Function to load `FreeSurfer` `mgz/mgh` file",
      "topics": [
        "read_mgz"
      ]
    },
    {
      "page": "read_volume",
      "title": "Read volume file in ''MGH'' or ''Nifti'' formats",
      "topics": [
        "read_volume"
      ]
    },
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