{
  "_id": "6a478d246527f6f71fa0e41b",
  "Package": "bidsr",
  "Title": "A Brain Imaging Data Structure ('BIDS') Parser",
  "Version": "0.1.1",
  "URL": "https://dipterix.org/bidsr/, https://github.com/dipterix/bidsr/",
  "BugReports": "https://github.com/dipterix/bidsr/issues",
  "Authors@R": "c(\nperson(\"Zhengjia\", \"Wang\", email = \"dipterix.wang@gmail.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-5629-1116\")),\nperson(\"Trustees of the University of Pennsylvania\", role = c(\"cph\"),\ncomment = \"All files in this package unless explicitly stated in the file or listed in the 'Copyright' section below.\")\n)",
  "Description": "Parse and read the files that comply with the brain\nimaging data structure, or 'BIDS' format, see the publication\nfrom Gorgolewski, K., Auer, T., Calhoun, V. et al. (2016)\n<doi:10.1038/sdata.2016.44>. Provides query functions to\nextract and check the 'BIDS' entity information (such as\nsubject, session, task, etc.) from the file paths and suffixes\naccording to the specification. The package is developed and\nused in the reproducible analysis and visualization of\nintracranial electroencephalography, or 'RAVE', see Magnotti,\nJ. F., Wang, Z., and Beauchamp, M. S. (2020)\n<doi:10.1016/j.neuroimage.2020.117341>; see 'citation(\"bidsr\")'\nfor details and attributions.",
  "Copyright": "This software includes material (schema files from directory\n'inst/bids-schema') from the 'BIDS' specification, which is\nlicensed under a Creative Commons Attribution 4.0 International\nLicense; see a copy of the license under\n'inst/bids-schema/LICENSE.txt', and website\n<https://bids.neuroimaging.io> for details.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Language": "en-US",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "cmake make libuv1-dev",
  "Repository": "https://rave-ieeg.r-universe.dev",
  "Date/Publication": "2025-07-22 17:37:14 UTC",
  "RemoteUrl": "https://github.com/dipterix/bidsr",
  "RemoteRef": "HEAD",
  "RemoteSha": "ef6099666aa7801158873e2fc50cba09bfe6b163",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-02 06:26:10 UTC",
    "User": "root"
  },
  "Author": "Zhengjia Wang [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-5629-1116>),\nTrustees of the University of Pennsylvania [cph] (All files in this\npackage unless explicitly stated in the file or listed in the\n'Copyright' section below.)",
  "Maintainer": "Zhengjia Wang <dipterix.wang@gmail.com>",
  "_user": "rave-ieeg",
  "_type": "src",
  "_file": "bidsr_0.1.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/b90b3e18da6d8791440502ec49df3d788bc78d79c1e097b6f7060d8035389d3c",
  "_filesize": 631410,
  "_sha256": "b90b3e18da6d8791440502ec49df3d788bc78d79c1e097b6f7060d8035389d3c",
  "_expires": "2026-10-11T10:21:24.000Z",
  "_created": "2026-07-02T06:26:10.000Z",
  "_published": "2026-07-03T10:21:24.639Z",
  "_jobs": [
    {
      "job": 84979567818,
      "time": 132,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8030654098"
    },
    {
      "job": 84979567979,
      "time": 135,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8030654978"
    },
    {
      "job": 84979567963,
      "time": 89,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8030641560"
    },
    {
      "job": 84979567859,
      "time": 99,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8030644491"
    },
    {
      "job": 84979567067,
      "time": 191,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8030614379"
    },
    {
      "job": 84979567500,
      "time": 143,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8030656854"
    },
    {
      "job": 84979567014,
      "time": 82,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8030639498"
    },
    {
      "job": 84979567534,
      "time": 80,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8030639069"
    },
    {
      "job": 84979567475,
      "time": 87,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8030640993"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/rave-ieeg/actions/runs/28569956009",
  "_status": "success",
  "_upstream": "https://github.com/dipterix/bidsr",
  "_commit": {
    "id": "ef6099666aa7801158873e2fc50cba09bfe6b163",
    "author": "dipterix <dipterix.wang@gmail.com>",
    "committer": "dipterix <dipterix.wang@gmail.com>",
    "message": "Ready for CRAN\n",
    "time": 1753205834
  },
  "_maintainer": {
    "name": "Zhengjia Wang",
    "email": "dipterix.wang@gmail.com",
    "login": "dipterix",
    "description": "Know the known to know the unknown",
    "uuid": 8163576,
    "orcid": "0000-0001-5629-1116"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "checkmate",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "fastmap",
      "role": "Imports"
    },
    {
      "package": "fs",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "nanotime",
      "role": "Imports"
    },
    {
      "package": "S7",
      "version": ">= 0.2.0",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "uuid",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "dipterix",
  "_selfowned": false,
  "_usedby": 2,
  "_updates": [
    {
      "week": "2025-30",
      "n": 3
    }
  ],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "dipterix",
      "count": 41,
      "uuid": 8163576
    }
  ],
  "_userbio": {
    "uuid": 126540136,
    "type": "organization",
    "name": "RAVE-iEEG",
    "followers": 20,
    "description": "Reproducible Analysis & Visualization of iEEG"
  },
  "_downloads": {
    "count": 250,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/bidsr"
  },
  "_devurl": "https://github.com/dipterix/bidsr",
  "_pkgdown": "https://dipterix.org/bidsr/",
  "_searchresults": 5,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/bidsr.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/dipterix/bidsr",
  "_realowner": "dipterix",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2025-04-02"
    },
    {
      "version": "0.1.1",
      "date": "2025-07-22"
    }
  ],
  "_exports": [
    "as_bids_tabular",
    "bids_project",
    "bids_property",
    "bids_property_character",
    "bids_property_choice",
    "bids_property_collapsed_character",
    "bids_property_data_frame",
    "bids_property_deprecated",
    "bids_property_entity_list",
    "bids_property_integerish",
    "bids_property_list",
    "bids_property_named_list",
    "bids_property_numeric",
    "bids_property_optional",
    "bids_property_prohibited",
    "bids_property_recommended",
    "bids_property_required",
    "bids_property_tabular_column_descriptor_list",
    "bids_property_tabular_content",
    "bids_property_tabular_meta",
    "bids_property_unnamed_list",
    "bids_subject",
    "BIDSClassBase",
    "BIDSDatasetDescription",
    "BIDSDatasetGeneratedBy",
    "BIDSEntity_any_optional",
    "BIDSEntity_any_prohibited",
    "BIDSEntity_any_required",
    "BIDSEntity_index_optional",
    "BIDSEntity_index_prohibited",
    "BIDSEntity_index_required",
    "BIDSEntity_label_optional",
    "BIDSEntity_label_prohibited",
    "BIDSEntity_label_required",
    "BIDSMap",
    "BIDSProject",
    "BIDSSubject",
    "BIDSTabular",
    "BIDSTabularColumnDescriptor",
    "BIDSTabularMetaSidecar",
    "BIDSTabularParticipants",
    "BIDSTabularPhenotype",
    "BIDSTabularSamples",
    "BIDSTabularScans",
    "BIDSTabularSessions",
    "BIDSURI",
    "download_bids_examples",
    "get_bids_dataset_description",
    "get_bids_entity",
    "get_bids_entity_rules",
    "get_bids_participants",
    "get_bids_phenotype_data",
    "get_bids_samples",
    "new_bids_class",
    "new_bids_entity_file_class",
    "new_bids_tabular_class",
    "parse_path_bids_entity",
    "query_bids",
    "resolve_bids_path",
    "save_bids_tabular",
    "save_bids_tabular_default",
    "set_props",
    "valid_eventually"
  ],
  "_help": [
    {
      "page": "BIDSTabular",
      "title": "Class definitions and utilities for 'BIDS' tabular",
      "topics": [
        "as_bids_tabular",
        "BIDSTabular",
        "BIDSTabularColumnDescriptor",
        "BIDSTabularMetaSidecar",
        "new_bids_tabular_class",
        "save_bids_tabular",
        "save_bids_tabular_default"
      ]
    },
    {
      "page": "bids_project",
      "title": "'BIDS' project class",
      "topics": [
        "BIDSProject",
        "bids_project"
      ]
    },
    {
      "page": "bids_property",
      "title": "''S7'' property for 'BIDS' classes",
      "topics": [
        "bids_property",
        "bids_property_character",
        "bids_property_choice",
        "bids_property_collapsed_character",
        "bids_property_data_frame",
        "bids_property_deprecated",
        "bids_property_entity_list",
        "bids_property_integerish",
        "bids_property_list",
        "bids_property_named_list",
        "bids_property_numeric",
        "bids_property_optional",
        "bids_property_prohibited",
        "bids_property_recommended",
        "bids_property_required",
        "bids_property_tabular_column_descriptor_list",
        "bids_property_tabular_content",
        "bids_property_tabular_meta",
        "bids_property_unnamed_list"
      ]
    },
    {
      "page": "bids_subject",
      "title": "'BIDS' subject class",
      "topics": [
        "BIDSSubject",
        "bids_subject"
      ]
    },
    {
      "page": "BIDSClassBase",
      "title": "Low-level abstract class for 'bidsr'",
      "topics": [
        "BIDSClassBase"
      ]
    },
    {
      "page": "BIDSDatasetGeneratedBy",
      "title": "Class definition for 'BIDS' meta-data ''GeneratedBy''",
      "topics": [
        "BIDSDatasetGeneratedBy"
      ]
    },
    {
      "page": "BIDSEntity",
      "title": "Class definitions of 'BIDS' entity",
      "topics": [
        "BIDSEntity",
        "BIDSEntity_any_optional",
        "BIDSEntity_any_prohibited",
        "BIDSEntity_any_required",
        "BIDSEntity_index_optional",
        "BIDSEntity_index_prohibited",
        "BIDSEntity_index_required",
        "BIDSEntity_label_optional",
        "BIDSEntity_label_prohibited",
        "BIDSEntity_label_required"
      ]
    },
    {
      "page": "BIDSMap",
      "title": "Low-level nested map to store key-value data with inherited structure",
      "topics": [
        "BIDSMap"
      ]
    },
    {
      "page": "BIDSTabularScans",
      "title": "'BIDS' scans table class",
      "topics": [
        "BIDSTabularScans"
      ]
    },
    {
      "page": "BIDSTabularSessions",
      "title": "'BIDS' sessions table class",
      "topics": [
        "BIDSTabularSessions"
      ]
    },
    {
      "page": "BIDSURI",
      "title": "'BIDS' uniform resource indicator ('URI') class definition",
      "topics": [
        "BIDSURI"
      ]
    },
    {
      "page": "download_bids_examples",
      "title": "Download 'BIDS' example data-sets",
      "topics": [
        "download_bids_examples"
      ]
    },
    {
      "page": "BIDSDatasetDescription",
      "title": "Class definition of 'BIDS' data-set description",
      "topics": [
        "BIDSDatasetDescription",
        "get_bids_dataset_description"
      ]
    },
    {
      "page": "get_bids_entity",
      "title": "Get 'BIDS' entity values from file",
      "topics": [
        "get_bids_entity",
        "get_bids_entity_rules"
      ]
    },
    {
      "page": "BIDSTabularParticipants",
      "title": "'BIDS' participant table class",
      "topics": [
        "BIDSTabularParticipants",
        "get_bids_participants"
      ]
    },
    {
      "page": "BIDSTabularPhenotype",
      "title": "'BIDS' phenotype and assessment table class",
      "topics": [
        "BIDSTabularPhenotype",
        "get_bids_phenotype_data"
      ]
    },
    {
      "page": "BIDSTabularSamples",
      "title": "'BIDS' samples table class",
      "topics": [
        "BIDSTabularSamples",
        "get_bids_samples"
      ]
    },
    {
      "page": "new_bids_class",
      "title": "Create new 'bidsr' class definition",
      "topics": [
        "new_bids_class"
      ]
    },
    {
      "page": "new_bids_entity_file_class",
      "title": "Class generator for 'BIDS' file class with entities",
      "topics": [
        "new_bids_entity_file_class"
      ]
    },
    {
      "page": "parse_path_bids_entity",
      "title": "Parse 'BIDS' entities from file path",
      "topics": [
        "parse_path_bids_entity"
      ]
    },
    {
      "page": "query_bids",
      "title": "Query 'BIDS'",
      "topics": [
        "query_bids"
      ]
    },
    {
      "page": "resolve_bids_path",
      "title": "Resolve path of a 'BIDS' object",
      "topics": [
        "resolve_bids_path"
      ]
    }
  ],
  "_readme": "https://github.com/dipterix/bidsr/raw/HEAD/README.md",
  "_rundeps": [
    "backports",
    "bit",
    "bit64",
    "checkmate",
    "data.table",
    "fastmap",
    "fs",
    "jsonlite",
    "lattice",
    "nanotime",
    "Rcpp",
    "RcppCCTZ",
    "RcppDate",
    "S7",
    "uuid",
    "zoo"
  ],
  "_vignettes": [
    {
      "source": "aaa-get-started.Rmd",
      "filename": "aaa-get-started.html",
      "title": "Get Started",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview of a BIDS project",
        "File dataset_description.json",
        "File participants.tsv",
        "Instantiate a BIDS subject",
        "Raw, source, or derivative data",
        "Query subject files by types",
        "Filter & get BIDS entity"
      ],
      "created": "2025-03-26 02:00:28",
      "modified": "2025-07-22 17:14:13",
      "commits": 5
    }
  ],
  "_score": 4.477121254719663,
  "_indexed": false,
  "_nocasepkg": "bidsr",
  "_universes": [
    "rave-ieeg"
  ],
  "_indexurl": "https://dipterix.r-universe.dev/bidsr",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-07-02T06:28:21.000Z",
      "distro": "resolute",
      "commit": "ef6099666aa7801158873e2fc50cba09bfe6b163",
      "fileid": "https://r2.ropensci.org/da71e99811d97a5c5ef5f0772c10d2f7df307f9229fdf03d5ae1d232728d06ef",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rave-ieeg/actions/runs/28569956009"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-07-02T06:28:24.000Z",
      "distro": "resolute",
      "commit": "ef6099666aa7801158873e2fc50cba09bfe6b163",
      "fileid": "https://r2.ropensci.org/73563c399bd744b032ebe6e938550c4759159c0a245dcf703488ff418af377b5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rave-ieeg/actions/runs/28569956009"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-07-02T06:27:43.000Z",
      "commit": "ef6099666aa7801158873e2fc50cba09bfe6b163",
      "fileid": "https://r2.ropensci.org/157afc504f55c07dc8ff42923c295ba292a0355a3468f48019141c1d98e460e5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rave-ieeg/actions/runs/28569956009"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-07-02T06:27:52.000Z",
      "commit": "ef6099666aa7801158873e2fc50cba09bfe6b163",
      "fileid": "https://r2.ropensci.org/b28daaebc2e37ff7877bd0fa8f4f0f8da7b46d29d2b4b31270a360dd0be46aee",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rave-ieeg/actions/runs/28569956009"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.1",
      "date": "2026-07-02T06:28:50.000Z",
      "commit": "ef6099666aa7801158873e2fc50cba09bfe6b163",
      "fileid": "https://r2.ropensci.org/a3a139741874a78cfe73febc19bc0a19ea944d18578f304b50f85a7a3e3918fe",
      "status": "success",
      "buildurl": "https://github.com/r-universe/rave-ieeg/actions/runs/28569956009"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-07-02T06:27:24.000Z",
      "commit": "ef6099666aa7801158873e2fc50cba09bfe6b163",
      "fileid": "https://r2.ropensci.org/8024bc463b7e4c2e8ef1cbb1df142c9a8ccc7cf84492ade64989272e76f1eee9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rave-ieeg/actions/runs/28569956009"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-07-02T06:27:22.000Z",
      "commit": "ef6099666aa7801158873e2fc50cba09bfe6b163",
      "fileid": "https://r2.ropensci.org/a4aa39dc30d5bc1cd762827dd6cd28a76316e1af12a4606fe99154c6acfc3b09",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rave-ieeg/actions/runs/28569956009"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-07-02T06:27:26.000Z",
      "commit": "ef6099666aa7801158873e2fc50cba09bfe6b163",
      "fileid": "https://r2.ropensci.org/c0ca8a87b2dc027416944e95bb564b79a7ebc0af2551576fc3ae314ebffef363",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rave-ieeg/actions/runs/28569956009"
    }
  ]
}